Association mapping of Verticillium Wilt Disease in a worldwide collection of cotton (Gossypium hirsutum L.)

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dc.contributor.authorBardak, Adem
dc.contributor.authorÇelik, Sadettin
dc.contributor.authorErdoğan, Oktay
dc.contributor.authorEkinci, Remzi
dc.contributor.authorDumlupinar, Ziya
dc.date.accessioned2021-04-08T12:19:01Z
dc.date.available2021-04-08T12:19:01Z
dc.date.issued2021en_US
dc.departmentDicle Üniversitesi, Ziraat Fakültesi, Tarla Bitkileri Bölümüen_US
dc.descriptionWOS:000623009000001
dc.descriptionPMID: 33562629
dc.description.abstractCotton (Gossypium spp.) is the best plant fiber source in the world and provides the raw material for industry. Verticillium wilt caused by Verticillium dahliae Kleb. is accepted as a major disease of cotton production. The most practical way to deal with verticillium wilt is to develop resistant/tolerant varieties after cultural practices. One of the effective selections in plant breeding is the use of marker-assisted selection (MAS) via quantitative trait loci (QTL). Therefore, in this study, we aimed to discover the genetic markers associated with the disease. Through the association mapping analysis, common single nucleotide polymorphism (SNP) markers were obtained using 4730 SNP alleles. As a result, twenty-three markers were associated with defoliating (PYDV6 isolate) pathotype, twenty-one markers with non-defoliating (Vd11 isolate) pathotype, ten QTL with Disease Severity Index (DSI) of the leaves at the 50–60% boll opening period and eight markers were associated with DSI in the stem section. Some of the markers that show significant associations are located on protein coding genes such as protein Mpv17-like, 21 kDa protein-like, transcription factor MYB113-like, protein dehydration-induced 19 homolog 3-like, F-box protein CPR30-like, extracellular ribonuclease LE-like, putative E3 ubiquitin-protein ligase LIN, pentatricopeptide repeat-containing protein At3g62890-like, fructose-1,6-bisphosphatase, tubby-like F-box protein 8, endoglucanase 16- like, glucose-6-phosphate/phosphate translocator 2, metal tolerance protein 11-like, VAN3-binding protein-like, transformation/transcription domain-associated protein-like, pyruvate kinase isozyme A, ethylene-responsive transcription factor CRF2-like, molybdate transporter 2-like, IRK-interacting protein-like, glycosylphosphatidylinositol anchor attachment 1 protein, U3 small nucleolar RNAassociated protein 4-like, microtubule-associated protein futsch-like, transport and Golgi organization 2 homolog, splicing factor 3B subunit 3-like, mediator of RNA polymerase II transcription subunit 15a-like, putative ankyrin repeat protein, and protein networked 1D-like. It has been reported in previous studies that most of these genes are associated with biotic and abiotic stress factors. As a result, once validated, it would be possible to use the markers obtained in the study in Marker Assisted Selection (MAS) breeding.en_US
dc.identifier.citationBardak, A., Çelik, S., Erdoğan, O., Ekinci, R. and Dumlupinar, Z. (2021). Association mapping of Verticillium Wilt Disease in a worldwide collection of cotton (Gossypium hirsutum L.). Plants, 10(2), 1-15.en_US
dc.identifier.doi10.3390/plants10020306
dc.identifier.endpage15en_US
dc.identifier.issn2223-7747
dc.identifier.issue2en_US
dc.identifier.pmid33562629
dc.identifier.scopus2-s2.0-85100466999
dc.identifier.scopusqualityQ1
dc.identifier.startpage1en_US
dc.identifier.urihttps://www.mdpi.com/2223-7747/10/2/306
dc.identifier.urihttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7916069/
dc.identifier.urihttps://hdl.handle.net/11468/6634
dc.identifier.volume10en_US
dc.identifier.wosWOS:000623009000001
dc.identifier.wosqualityQ1
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.institutionauthorEkinci, Remzi
dc.language.isoenen_US
dc.publisherMDPIen_US
dc.relation.ispartofPlants
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectCottonen_US
dc.subjectMarkeren_US
dc.subjectSNPen_US
dc.subjectGBSen_US
dc.subjectAssociation mappingen_US
dc.subjectVerticillium dahlia Kleb.en_US
dc.subjectPathotypeen_US
dc.subjectStress genesen_US
dc.titleAssociation mapping of Verticillium Wilt Disease in a worldwide collection of cotton (Gossypium hirsutum L.)en_US
dc.titleAssociation mapping of Verticillium Wilt Disease in a worldwide collection of cotton (Gossypium hirsutum L.)
dc.typeArticleen_US

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