A key gene bHLH115 in iron homeostasis: comprehensive bioinformatics analyses in Arabidopsis, tomato, rice, and maize

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dc.contributor.authorKurt, Firat
dc.contributor.authorFiliz, Ertugrul
dc.contributor.authorKurt, Baris
dc.date.accessioned2024-04-24T16:02:06Z
dc.date.available2024-04-24T16:02:06Z
dc.date.issued2019
dc.departmentDicle Üniversitesien_US
dc.description.abstractbHLH115 transcription factor (TF) is a positive regulator of the Fe-deficiency and plays essential roles in the stress-related regulation network. In this study, orthologous bHLH115 genes in Arabidopsis, tomato, rice, and maize were analyzed using in silico methods. All bHLH115 proteins contained PF00010 (HLH: Helix-loop-helix DNA-binding domain) domain structure andtheir sub-cellular localizations were predicted as nucleus. The bHLH115 orthologues in monocots and dicots clearly diverged from each other. The expression analyses revealed that orthologous genes of bHLH115 in queried species were highly expressed in seed parts, leaf, stem, and flower parts. The bHLH115 genes were co-expressed with genes in plant defense system, and withgenes involving inbiotic and abiotic stress responses. In terms of protein structures, OsbHLH115 and ZmbHLH115, and AtbHLH115 and SlbHLH115 had the highest protein structure similarities. In addition, bHLH115 proteins have bZIP, bHLH and MYB transcription factor binding sites strengthens their engagement in various metabolic ways. Molecular docking analyses showed the different binding sites based on plant species, suggesting functional flexibilities of bHLH115 gene.en_US
dc.identifier.doi10.1007/s10534-019-00199-z
dc.identifier.endpage656en_US
dc.identifier.issn0966-0844
dc.identifier.issn1572-8773
dc.identifier.issue4en_US
dc.identifier.pmid31062267
dc.identifier.scopus2-s2.0-85065330240
dc.identifier.scopusqualityQ1
dc.identifier.startpage641en_US
dc.identifier.urihttps://doi.org/10.1007/s10534-019-00199-z
dc.identifier.urihttps://hdl.handle.net/11468/14629
dc.identifier.volume32en_US
dc.identifier.wosWOS:000476715000006
dc.identifier.wosqualityQ3
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofBiometals
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectIron Homeostasisen_US
dc.subjectBhlh115en_US
dc.subjectCo-Expression Networken_US
dc.subjectMolecular Dockingen_US
dc.subjectBioinformaticsen_US
dc.titleA key gene bHLH115 in iron homeostasis: comprehensive bioinformatics analyses in Arabidopsis, tomato, rice, and maizeen_US
dc.titleA key gene bHLH115 in iron homeostasis: comprehensive bioinformatics analyses in Arabidopsis, tomato, rice, and maize
dc.typeArticleen_US

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