Three MSA tools analysis in DNA and protein datasets

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dc.authorid0000-0002-6384-9146en_US
dc.authorid0000-0003-4902-4022en_US
dc.authorid0000-0003-2605-4587en_US
dc.contributor.authorAşır, Fırat
dc.contributor.authorKorak, Tuğcan
dc.contributor.authorÖztürk, Özgür
dc.date.accessioned2023-03-17T10:24:28Z
dc.date.available2023-03-17T10:24:28Z
dc.date.issued2021en_US
dc.departmentDicle Üniversitesi, Tıp Fakültesi, Temel Tıp Bilimleri Bölümü, Histoloji ve Embriyoloji Ana Bilim Dalıen_US
dc.description.abstractMultiple sequence alignment (MSA) is the alignment of three or more sequences of DNA,RNA, and protein. MSA is used to construct phylogenetic trees and to compare evolutionaryrelationships between sequences analyzing similarities and dissimilarities. A variety of multiplesequence alignment tools are available, each using different methods and parameters to alignsequences. In this article three MSA tools; CLUSTALW, SAGA, and MAFFT were used to analyze fivedatasets BALiBASE_R9, DIRMBASE, SABmark, DNABali, and ProteinBali. The results showed that MAFFT may be more useful to align DNA and protein sequences than the other two tools.en_US
dc.identifier.citationAşır, F., Korak, T. ve Öztürk, Ö. (2021). Three MSA tools analysis in DNA and protein datasets. Middle East Journal of Science, 7(2), 89-99.en_US
dc.identifier.doi10.51477/mejs.983750
dc.identifier.endpage99en_US
dc.identifier.issn2618-6136
dc.identifier.issue2en_US
dc.identifier.startpage89en_US
dc.identifier.trdizinid507485
dc.identifier.urihttps://search.trdizin.gov.tr/tr/yayin/detay/507485
dc.identifier.urihttps://hdl.handle.net/11468/11438
dc.identifier.urihttps://search.trdizin.gov.tr/yayin/detay/507485
dc.identifier.volume7en_US
dc.indekslendigikaynakTR-Dizin
dc.institutionauthorAşır, Fırat
dc.language.isoenen_US
dc.publisherINESEG Yayıncılıken_US
dc.relation.ispartofMiddle East Journal of Science
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectMultiple sequence alignmenten_US
dc.subjectMAFFTen_US
dc.subjectSAGAen_US
dc.subjectCLUSTALWen_US
dc.titleThree MSA tools analysis in DNA and protein datasetsen_US
dc.titleThree MSA tools analysis in DNA and protein datasets
dc.typeArticleen_US

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