Three MSA tools analysis in DNA and protein datasets
Yükleniyor...
Tarih
2021
Yazarlar
Dergi Başlığı
Dergi ISSN
Cilt Başlığı
Yayıncı
INESEG Yayıncılık
Erişim Hakkı
info:eu-repo/semantics/openAccess
Özet
Multiple sequence alignment (MSA) is the alignment of three or more sequences of DNA,RNA, and protein. MSA is used to construct phylogenetic trees and to compare evolutionaryrelationships between sequences analyzing similarities and dissimilarities. A variety of multiplesequence alignment tools are available, each using different methods and parameters to alignsequences. In this article three MSA tools; CLUSTALW, SAGA, and MAFFT were used to analyze fivedatasets BALiBASE_R9, DIRMBASE, SABmark, DNABali, and ProteinBali. The results showed that MAFFT may be more useful to align DNA and protein sequences than the other two tools.
Açıklama
Anahtar Kelimeler
Multiple sequence alignment, MAFFT, SAGA, CLUSTALW
Kaynak
Middle East Journal of Science
WoS Q Değeri
Scopus Q Değeri
Cilt
7
Sayı
2
Künye
Aşır, F., Korak, T. ve Öztürk, Ö. (2021). Three MSA tools analysis in DNA and protein datasets. Middle East Journal of Science, 7(2), 89-99.
