Complete mitogenomes of Turkish tree squirrels, Sciurus anomalus and S. vulgaris, (Sciuridae: Rodentia: Mammalia) and their phylogenetic status within the tribe Sciurini

Basit Öğe Kaydı
dc.contributor.authorIbis, Osman
dc.contributor.authorSelcuk, Ahmet Yesari
dc.contributor.authorTeber, Saffet
dc.contributor.authorBaran, Mehmet
dc.contributor.authorKaya, Alaettin
dc.contributor.authorOzcan, Servet
dc.contributor.authorKefelioglu, Haluk
dc.date.accessioned2024-04-24T16:14:51Z
dc.date.available2024-04-24T16:14:51Z
dc.date.issued2022
dc.departmentDicle Üniversitesien_US
dc.description.abstractThe genus Sciurus, a member of the family Sciuridae, is widely distributed in the Holarctic region. To better understand mitogenomic characteristics and to reveal internal phylogenetic relationships of the genus, 20 complete mitogenomes of Turkish tree squirrels were successfully sequenced for the first time, including 19 for S. anomalus (from 16,505 bp to 16,510 bp) and one for S. vulgaris (16,511 bp). The mitogenomes of two species were AT-biased. All tRNAs for two species displayed a typical clover-leaf structure, except for tRNA(Ser(AGY)). The tRNA Serine1 (S1)-GCT structure lacked the dihydrouridine (DHU) loop and stem. Based on mitogenomic dataset for phylogeny of Sciurinae, phylogenetic analyses (Bayesian Inference and Maximum Likelihood) did not support monophyly of Sciurus and proposed that S. anomalus, the most basal taxa in the Sciurini tribe, had at least five mitogenome lineages, which were also supported by network analysis. The dissimilarities among the five line-ages of S. anomalus ranged from 0.0042 (0.42%) to 0.0062 (0.62%) using K2P sequence pairwise distances. In addition to this mitogenomic analysis result, phylogenetic analyses using the CYTB +D-loop dataset proposed the existence of at least nine lineages for S. anomalus, which was different than those of the previous studies. The current study proposed that the use of mitogenomic data for reconstructing the phylogeny of Turkey's Sciurus holds an important value for revealing evolutionary relationships.en_US
dc.description.sponsorshipResearch Fund of Erciyes University [FBA -2020-9926]en_US
dc.description.sponsorshipAcknowledgements This study was supported by the Research Fund of Erciyes University (Project Nr: FBA -2020-9926) . We would like to thank to Cem Ak?n and Mustafa Akca for photos used in the circular maps of Turkish Sciurus anomalus and S. vulgaris mitogenomes.en_US
dc.identifier.doi10.1016/j.gene.2022.146773
dc.identifier.issn0378-1119
dc.identifier.issn1879-0038
dc.identifier.pmid35905846
dc.identifier.scopus2-s2.0-85135510744
dc.identifier.scopusqualityQ2
dc.identifier.urihttps://doi.org/10.1016/j.gene.2022.146773
dc.identifier.urihttps://hdl.handle.net/11468/15445
dc.identifier.volume841en_US
dc.identifier.wosWOS:000862700000007
dc.identifier.wosqualityQ2
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoenen_US
dc.publisherElsevieren_US
dc.relation.ispartofGene
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectSciuridaeen_US
dc.subjectSciurus Anomalusen_US
dc.subjectS. Vulgarisen_US
dc.subjectMitogenomesen_US
dc.subjectPhylogenyen_US
dc.subjectTurkeyen_US
dc.titleComplete mitogenomes of Turkish tree squirrels, Sciurus anomalus and S. vulgaris, (Sciuridae: Rodentia: Mammalia) and their phylogenetic status within the tribe Sciurinien_US
dc.titleComplete mitogenomes of Turkish tree squirrels, Sciurus anomalus and S. vulgaris, (Sciuridae: Rodentia: Mammalia) and their phylogenetic status within the tribe Sciurini
dc.typeArticleen_US

Dosyalar

Koleksiyon

WoS İndeksli Yayınlar Koleksiyonu
PubMed İndeksli Yayın Koleksiyonu
Scopus İndeksli Yayınlar Koleksiyonu