Exploring the genetic diversity and population structure of upland cotton germplasm by iPBS-retrotransposons markers

Basit Öğe Kaydı
dc.authorid0000-0003-2212-3274en_US
dc.authorid0000-0002-0637-9619en_US
dc.authorid0000-0002-9147-672Xen_US
dc.authorid0000-0001-8566-3388en_US
dc.authorid0000-0002-7470-0080en_US
dc.authorid0000-0001-6479-6050en_US
dc.contributor.authorBaran, Nurettin
dc.contributor.authorShimira, Flavien
dc.contributor.authorNadeem, Muhammad Azhar
dc.contributor.authorAltaf, Muhammad Tanveer
dc.contributor.authorAndırman, Mehtap
dc.contributor.authorBaloch, Faheem Shehzad
dc.contributor.authorTemiz, Mefhar Gültekin
dc.date.accessioned2023-10-05T10:29:00Z
dc.date.available2023-10-05T10:29:00Z
dc.date.issued2023en_US
dc.departmentDicle Üniversitesi, Ziraat Fakültesi, Tarla Bitkileri Bölümüen_US
dc.description.abstractBackground: Upland cotton is one of the utmost significant strategic fiber crops, and play a vital role in the global textile industry. Methods and results: A total of 128 genotypes comprised Gossypium hirsutum L, Gossypium barbadense L., and pure lines were used to examine genetic diversity using iPBS-retrotransposon markers system. Eleven highly polymorphic primers yielded 287 bands and 99.65% polymorphism was recorded. The mean polymorphism information content was estimated at 0.297 and the average diversity indices for the effective number of alleles, Shannon’s information index, and overall gene diversity were 1.481, 0.443, and 0.265, respectively. The analysis of molecular variance (AMOVA) revealed that 69% of the genetic variation was within the population. A model-based STRUCTURE algorithm divided the entire germplasm into four populations and one un-classified population, the genotypes G42 (originating in Egypt) and G128 (originating in the United States), showed the highest genetic distance (0.996) so these genotypes could be suggested for breeding programs as parental lines. Conclusions: This is the first investigation using an iPBS-retrotransposon marker system to examine the genetic diversity and population structure of upland cotton germplasm. The rich diversity found in upland cotton germplasm could be exploited as a genetic resource when developing breeding programs and could also help with efforts to breed cotton around the world. These findings also show the applicability and effectiveness of iPBS-retrotransposons for the molecular characterization of cotton germplasm.en_US
dc.identifier.citationBaran, N., Shimira, F., Nadeem, M. A., Altaf, M. T., Andırman, M., Baloch, F. S. ve diğerleri. (2023). Exploring the genetic diversity and population structure of upland cotton germplasm by iPBS-retrotransposons markers. Molecular Biology Reports, 50(6), 4799-4811.en_US
dc.identifier.doi10.1007/s11033-023-08399-0
dc.identifier.endpage4811en_US
dc.identifier.issn0301-4851
dc.identifier.issue6en_US
dc.identifier.pmid37031323
dc.identifier.scopus2-s2.0-85151993048
dc.identifier.scopusqualityQ2
dc.identifier.startpage4799en_US
dc.identifier.urihttps://link.springer.com/article/10.1007/s11033-023-08399-0
dc.identifier.urihttps://hdl.handle.net/11468/12747
dc.identifier.volume50en_US
dc.identifier.wosWOS:000967323900003
dc.identifier.wosqualityN/A
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.institutionauthorTemiz, Mefhar Gültekin
dc.language.isoenen_US
dc.publisherSpringer Science and Business Mediaen_US
dc.relation.ispartofMolecular Biology Reports
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectCotton fiberen_US
dc.subjectGenetic diversityen_US
dc.subjectGossypium barbadenseen_US
dc.subjectGossypium hirsutumen_US
dc.subjectiPBS-retrotransposonen_US
dc.subjectPopulation structureen_US
dc.subjectTurkeyen_US
dc.titleExploring the genetic diversity and population structure of upland cotton germplasm by iPBS-retrotransposons markersen_US
dc.titleExploring the genetic diversity and population structure of upland cotton germplasm by iPBS-retrotransposons markers
dc.typeArticleen_US

Dosyalar

Orijinal paket
Listeleniyor 1 - 1 / 1
[ X ]
İsim:
Exploring the genetic diversity and population structure of upland.pdf
Boyut:
1.4 MB
Biçim:
Adobe Portable Document Format
Açıklama:
Makale Dosyası
İndir
Lisans paketi
Listeleniyor 1 - 1 / 1
[ X ]
İsim:
license.txt
Boyut:
1.44 KB
Biçim:
Item-specific license agreed upon to submission
Açıklama:
İndir

Koleksiyon

Tarla Bitkileri Bölümü Koleksiyonu
PubMed İndeksli Yayın Koleksiyonu
Scopus İndeksli Yayınlar Koleksiyonu
WoS İndeksli Yayınlar Koleksiyonu